e-Therapeutics was founded in 2003 to exploit the proprietary network analysis technology originally developed by founder and CEO Professor Malcolm Young’s research group. Early discovery efforts generated the legacy pipeline. Equity raises in 2011 and 2013 provided substantial resources to enable the company to exploit advances in in-silico modelling and data analysis techniques, to accelerate and strengthen its discovery capabilities and infrastructure. Thus
e-Therapeutics was able to embark on a second wave of drug discovery focused on new chemical entities or NCEs (to exploit higher-value partnering opportunities). The company now has a wide range of NCE discovery assets in a variety of disease areas. As part of our presentation of
e-Therapeutics’ discovery approach and platform benefits, we highlight select programmes below.
Building the discovery platform
With cash in the bank, e-Therapeutics had the resources necessary to establish the Oxfordshire-based technology centre in 2012, recruit a head of bioinformatics and build a bio- and chemo-informatics team. Over the subsequent years, the platform was developed and refined, improving by orders of magnitude. Construction and the ongoing development of the in-silico discovery platform has been a significant task, with the company having to resolve various technical issues integrating ‘big data’ and network science. Put simplistically, this has involved inputting detailed lists of proteins, protein-protein interactions, compounds (at present nine million are included in the database) and compound-protein data interactions (with removal of duplicates). Disease networks are constructed on the basis of these data, which are then analysed to identify compounds that have a multi-target effect on disrupting these networks. These compounds are then screened in relevant cell-based assays to establish potency. Improved efficacy could result from this multi-target approach rather than focusing on a single target. Discovery workflow is shown in Exhibit 2.
Exhibit 2: e-Therapeutics discovery workflow
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ETS2300, the telomerase inhibitor programme, provides a case study
e-Therapeutics selected telomerase as a potential target due to its role in development of multiple cancers through a variety of mechanisms. The strategy was to find compounds that could disrupt the various aspects of telomerase biology. Applying an in-silico overlay to 15 different disease networks, e-Therapeutics was able to ascertain a common footprint, identifying compounds with the right disruptive interactions. 393 compounds were screened in two breast cancer cell lines, with 106 active hits (27%), of which 49 were selectively active (12.5%), ie having at least threefold selectivity for cancer cells vs fibroblasts at commercially viable concentrations. Multiple chemotypes were detected; this is important as it has the potential to increase the programme’s likelihood of success and provides more options to select the best leads for optimisation. Early data on cell proliferation suggest that ETS2300 has greater potency than best previous small molecule telomerase inhibitors and imetelstat (Phase II: Geron/Janssen), as well as a faster onset of effect vs imetelstat.
e-Therapeutics’ discovery platform has yielded a high number of potent compounds across multiple indications (Exhibit 3) and, in contrast to traditional drug discovery approaches, has identified these in considerably shorter timeframes and at lower cost/more modest investment.
Exhibit 3: Discovery projects (by target and therapeutic area)
Immuno-oncology |
Oncology – targeted resistance |
Oncology |
Others |
Tryptophan catabolism |
Hedgehog pathway (ETS2400) |
Telomerase (ETS2300) |
Viral lifecycle (ETS5200) |
Hypoxia |
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Pro-apoptotics |
Small molecule anti-TNFα (ETS3100) |
Immune checkpoints |
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Autophagy |
Sepsis |
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Neurodegeneration |
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Pain |
High-throughput screening (HTS), the standard lead generation approach in the pharmaceutical industry, has a ‘hit-rate’ reported to be between 0.01% and 3%, depending on the assay used and the type of molecule and target being screened. A ‘hit’ is a compound that has the desired activity in a compound screen and whose activity is confirmed on retesting. By contrast, the discovery yield from e-Therapeutics’ network pharmacology platform has averaged around 25% in the ongoing live discovery projects, with multiple active and potent compounds across multiple chemotypes identified in each (Exhibit 4). This alone is an endorsement of the network pharmacology approach to drug discovery. Further, this approach also enables an accelerated timescale for drug discovery, with the time from initiating a new project to identifying active compounds in cell-based laboratory assays potentially as short as six months. This has allowed the company to pick up the pace on its discovery programmes, undertaking in vitro testing of many thousands of molecules, each with a strong rationale from network pharmacology.
Exhibit 4: Platform comparative hit rates at first pass assay
Project |
Compounds screened |
No. hits <10μM |
No. hits <5μM |
Hit rate % |
No. of chemotypes |
ETS2300 (telomerase) |
393 |
106 |
49 |
27.0 |
6 |
ETS2400 (hedgehog) |
1,200 |
144 |
63 |
12.0 |
>20 |
ETS3100 (anti-TNFα) |
356 |
153 |
38 |
43.0 |
12 |
ETS6700 (CNS degeneration) |
191 |
26 |
15 |
13.6 |
Not disclosed |
ETS5200 (antivirals) |
934 |
129 |
8 |
13.8 |
11 |
The 12 active discovery projects are all in areas of significant unmet medical need where there is general interest across the industry, and thus the potential for licensing deals. Three projects are in lead optimisation and two in hit confirmation and quality control/IP assessment. Exhibit 5 provides an overview of the preclinical workflow and an indication of the number of projects at each step.
Exhibit 5: Preclinical status of e-Therapeutics’ discovery pipeline
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Transitioning to commercialisation: Unlocking value
The near-term challenge for e-Therapeutics is securing partners. Business development is a key area of focus; the company has engaged external business development consultants and is investing in in-house business development. The proposed acquisition of Searchbolt, an internet search engine technology developer, which was spun off from e-Therapeutics pre-IPO, is also part of the preparations. This acquisition enables e-Therapeutics to consolidate the ownership of its IP, bringing back in house a licence relating to its core IP.
Securing a partner will unlock the inherent value in the discovery platform and projects, as well as providing important validation for the network pharmacology approach. Cash inflows from potential deals would bring e-Therapeutics closer to the point at which it becomes sustainably funded, providing the resources to invest into additional discovery projects. On end-FY16 resources of £27.3m (including the yet to be received R&D tax credit for FY16), e-Therapeutics has sufficient funds to enable five or more existing projects to complete preclinical testing.
The 12 active discovery projects are all targeted in areas of high and immediate commercial demand, with a particular focus on cancer immunotherapy and mitigation of therapeutic resistance to targeted cancer therapies. Three projects are now in lead optimisation: ETS2300 (telomerase inhibition), ETS2400 (hedgehog pathway inhibition) and ETS3100 (anti-TNFα). The company anticipates that once the most promising candidates have been identified, pre-IND development and testing for the most advanced should be able to start by end-2016, with potential for clinical development to begin in 2017. These projects have significant commercial appeal and, as a result, the prospect of higher-value partnering opportunities or preclinical out-licensing is drawing closer.
Management is targeting potential partners globally that have specific expertise in the disease areas on which e-Therapeutics is focusing. Multiple conversations are ongoing, although the company is open-minded about the timing and stage at which it will partner an asset. We believe that once lead compounds have been selected and IND-enabling studies are underway, the attention of partners is likely to shift from being a ‘watching brief’ towards executing a deal. Deal timing is unknown at this point although, in our view, first deals are possible from H216 onwards once in vivo and toxicology data are available; this will be a significant de-risking step. Roughly one-third of drug discovery projects fail in preclinical development, with non-clinical toxicology findings being the most common cause. A second unknown is deal structure. However, given the company platform and pipeline, various deal structures could be contemplated, including:
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Preclinical out-licensing: typical economics incorporate an upfront payment, development (and potentially sales) milestones, plus single-digit sales royalties. Potential partners for the discovery assets will likely have existing development capabilities in the underlying disease area, with a longer-term aim of either self-commercialisation or entering into a downstream commercialisation deal depending on their size, geography and capabilities. ETS2101 falls within this category given the need for reformulation; progress and supporting preclinical data will determine timing and deal economics. Assuming positive progress, ETS2101 may attract a large pharma player or medium-sized oncology specialist.
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Discovery collaborations: this type of deal involves earlier-stage collaborations, which could include the application of the discovery platform to in-house pharma compound databases. Such a deal would involve a licence fee for technology access and resource expertise, coupled with success-based milestones. Likely partners would be large pharma drug discovery units.
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Clinical out-licensing: e-Therapeutics is seeking a partner to complete development of and commercialise ETS6103. As a niche asset it could be a good fit for a local speciality pharma.
ETS2400: Hedgehog inhibitor with a difference
Commercial opportunity and unmet need are central to building a discovery pipeline of differentiated and potentially disruptive assets, which should prove attractive to partners. A prime example of this is the targeted resistance rescue project, ETS2400. Targeted cancer therapies are frequently extremely effective initially; however, resistance often evolves, rendering the effect short-lived and allowing the cancer to return more aggressively. Thus, a therapy that can help overcome this resistance is significantly appealing. The therapeutic rescue project addresses resistance to the Hedgehog signaling pathway (this pathway is reactivated in many cancers enabling proliferation of cancer cells). The small molecules vismodegib (Roche) and sonidegib (Novartis) are inhibitors of SMO, a component of the Hedgehog signaling pathway, and are approved for the treatment of basal cell carcinoma (BCC). While patients initially respond well, many develop resistance, rendering the drug ineffective after a time, and consequently impeding its widespread clinical use. Genomic analysis of tumour biopsies has revealed that resistance is associated with Hedgehog pathway reactivation, predominantly through mutation of SMO. The finding of intra-tumour heterogeneity in BCC also suggests that targeting multiple components of the Hedgehog pathway is required to overcome resistance. As e-Therapeutics’ approach targets the network as a whole, it disrupts the potential for evolution of resistance. ETS2400 includes inhibitors of the Hedgehog pathway that do not bind to SMO, with nanomolar potency and no evidence of cytotoxicity.
The potential to extend the use of the SMO inhibitors with such a therapy, which in theory could transform them into blockbusters, would suggest it is of strong interest to Roche and Novartis and to any other companies with SMO inhibitors in development. Furthermore, as resistance is a problem common to targeted therapies as a whole, the platform's ability to address this issue could disrupt the oncology market, equating to considerable commercial potential.