platON: New platform with AsiDNA first to Phase I
In October 2017, Onxeo announced a major R&D expansion by introducing a proprietary platform – platON – based on decoy oligonucleotides. Decoy oligonucleotides are based on three components: double strand oligonucleotides, a linker (coupling agent), and a cellular uptake facilitator (Exhibit 2). Each of these compounds can be modified resulting in different products, which main mechanism of action is to act as a decoy and target the mechanisms of tumour DNA function regulation. The first product – AsiDNA, a DNA break repair inhibitor – is expected to advance into clinical testing in 2018 using an intravenous administration route.
Exhibit 2: AsiDNA – first product from platON platform
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Source: Onxeo. Note: DNA-PK = DNA-dependent protein kinase; PARP = poly(ADP ribose) polymerase.
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Synthetic lethality and rationale for AsiDNA
DNA repair inhibition is experiencing a surge in interest after the three lead drugs in the area, all PARP inhibitors (Lynparza, Rubraca and Zejula) have been approved by the FDA over the past three years. Regardless of the type of DNA lesion (endogenous like replication errors or exogenous like chemotherapy and radiation) cells initiate a highly coordinated cascade of events known as DNA damage response (DDR), which leads to the initiation of the damage repair mechanism specific to the type of the lesion (Exhibit 3). There are at least four main, partly overlapping DNA repair pathways in mammals: base excision repair (BER), mismatch repair (MMR), nucleotide excision repair (NER) and double-strand break repair via two different pathways – homologous recombination (HR) and non-homologous end joining (NHEJ)1 (Exhibit 3):
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Single strand breaks are repaired by BER. Among other enzymes involved in BER are poly(ADP ribose) polymerase 1 and 2 (PARP1 and PARP2), which act as sensors and signal transducers1. PARP inhibition therefore affects this pathway specifically.
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Double strand breaks are the most serious lesions (one unrepaired double strand break could trigger cell death), which are primarily repaired via two pathways, HR and NHEJ. The stage of cell cycle influences which mechanism is used. Among the important proteins involved in this pathway are BRCA1 and BRCA2.
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NER pathway repairs a wide class of helix-distorting lesions that interfere with base pairing and obstruct transcription and normal replication.
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MMR pathway repairs base mismatches that occur during cell DNA replication.
The aforementioned PARP inhibitors, the most advanced drugs in DNA repair inhibition field, inhibit BER pathway resulting in the accumulation of single strand DNA breaks, which eventually leads to double strand breaks2. This could cause cell death, but in healthy cells double strand breaks are repaired via HR or NHEJ pathways. Therefore, otherwise healthy cells are not sensitive to PARP inhibition alone. In a special case of mutated BRCA1/2 genes, the HR pathway is dysfunctional and these cells have been shown to be 100- to 1,000-fold more sensitive to PARP inhibition2. BRCA1/2 mutations are found in around 15% of all ovarian cancer, which is the indication all approved PARP inhibitors were developed for. A biological defect such as mutated BRCA (dysfunctional HR) complemented by a drug leading to cell death, a PARP inhibitor in this case (blocks BER), is known as synthetic lethality.
Exhibit 3: DNA damage, DDR pathways and various enzymes involved in each pathway
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Source: T. Cervelli et al. Note: DDR = DNA damage response.
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The rationale for using AsiDNA standalone and in combos
PARP inhibitors have shown promising efficacy and safety in clinical trials, but the main drawbacks were the necessity of a dysfunctional HR pathway and a rapid emergence of resistance2. First-in-class AsiDNA is based on signal-interfering DNA technology, which if introduced into a cell acts as a signal mimicking the damage of the cell’s own DNA. AsiDNA molecules are short double-strand DNA that mimic double-strand breaks in the cell’s DNA and are recognised as “damaged DNA” by repair and signalling proteins. Namely, AsiDNA hyper-activates PARP1 and the DNA-dependent protein kinase (DNA-PK) leading to a cascade of repair proteins being recruited to “repair the damage”, as a result of which the actual damage of a cell’s DNA remains unrepaired. This action renders the HR and NHEJ pathways dysfunctional.
Since HR and NHEJ are responsible for repairing double strand breaks, AsiDNA’s ability to disrupt these pathways was initially explored in combination with DNA-damaging therapies, such as radiotherapy and chemotherapy. Due to its independent mechanism of action there is also strong rationale to use AsiDNA in combination with PARP inhibitors to potentiate their effect in BRACA-mutated tumours. In addition, AsiDNA could potentially be used to sensitise BRCA non-mutated tumours to PARP inhibitors, which in turn would expand their use substantially.
AsiDNA: A differentiated DNR repair inhibitor
The initial preclinical efficacy of AsiDNA technology was observed in combination with irradiation, ie sensitising tumours to radiation therapy. However, due to AsiDNA acting as a non-specific decoy activating a false DNA damage signal, other treatment modalities that produce DNA damage were also found to be possible for use in combination with AsiDNA, such as chemotherapy (with alkylating agents, antimetabolites, topoisomerase inhibitor) and radio-ablation therapy (hyperthermia). Existing preclinical data from several tumour models with different DNA damage therapies and with PARP inhibitors using different AsiDNA administration routes show that AsiDNA is a very versatile technology (Exhibit 4).
Exhibit 4: AsiDNA efficacy was demonstrated in several preclinical models
Tumour model |
Treatment in combination |
Route of administration |
Glioblastoma |
AsiDNA + Radiotherapy |
Intratumoural |
Cutaneous melanoma |
AsiDNA + Radiotherapy |
Subcutaneous/peritumoural |
Cutaneous melanoma |
AsiDNA + Radiotherapy |
Intratumoural+subcutaneous/peritumoural |
Colorectal cancer |
AsiDNA + RFA* (hyperthermia) |
Intratumoural+subcutaneous |
Colorectal Liver metastasis |
AsiDNA + chemotherapy** |
Intraperitoneal |
Breast cancer (TNBC) |
AsiDNA standalone or with chemotherapy |
Systemic |
Breast cancer |
AsiDNA + olaparib (PARPi) |
Intratumoural |
Source: Edison Investment Research, Onxeo. Note: *RFA: Radio Frequency Ablation. **5FU+oxaliplatin.
Clinical data support further development
AsiDNA (formerly DT01) has already been tested in a clinical trial with skin melanoma patients by the original developer DNA Therapeutics, which was acquired by Onxeo in February 2016. In the Phase I DRIIM study the drug was injected intratumourally or peritumourally in conjunction with the radiation therapy. DRIIM was an open-label, non-randomised, multicentre, dose escalation study. In total, 23 patients received a full course of treatment and were evaluated for safety and pharmacokinetics, while 21 patients with a total of 76 skin melanoma lesions were evaluated for initial efficacy. Key headline results were presented at ASCO in May 2015 and published later on3:
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AsiDNA was well tolerated and did not induce additional toxicity when combined with radiotherapy. Most frequent adverse events were reversible grade 1 and 2 injection site reactions, while the maximum tolerated dose was not reached.
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AsiDNA did not cause innate immune response, which would imply that the drug is less likely to be neutralised by the immune system or cause unwanted significant local inflammation.
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AsiDNA subcutaneous injections led to systemic exposure, which provided additional insights: lesions that were not injected with AsiDNA demonstrated a response as well, indicating AsiDNA’s ability to circulate and advocating for a systemic effect. This, and a good safety profile allowed for testing systemic delivery of AsiDNA.
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In the 21 patients that were evaluated for efficacy, a total of 76 tumour lesions were treated, of which 41 lesions were injected with AsiDNA.
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Objective response rate of all lesions was 59%, complete response was 30% and partial response was 29%. For comparison, similar radiation therapy schemes were reported to have complete response rate of 9%3.
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The overall response rate of the 41 lesions injected with AsiDNA was 68% whereas in the 35 non-injected lesions it was 49% (P=0.103). This lack of significant difference could at least partially be explained by an abscopal effect through immunogenicity (ie the immune system was trained to attack the injected tumours and then non-injected as well) and systemic exposure to AsiDNA after it was absorbed from the local injection site.
Systemic administration opens many possibilities
Based on preclinical data and insights from the DRIIM trial, Onxeo believed that AsiDNA’s systemic administration was feasible in humans, which could open potential to explore many more indications than with local administration. The company has conducted preclinical studies and, in July 2017, announced its first preclinical proof-of-concept data with AsiDNA demonstrating the potential for intravenous administration. AsiDNA standalone significantly decreased tumour growth in a triple negative breast cancer (TNBC) model and improved survival (Exhibit 5). Onxeo also tested the drug in combination with the classic neoadjuvant chemotherapy (ie given before surgery), carboplatin. Despite AsiDNA being administered in lower doses than in the standalone trial, the combination with carboplatin outperformed other arms (untreated, low dose AsiDNA alone or carboplatin alone; Exhibit 6).
Exhibit 5: AsiDNA standalone, systemic administration
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Exhibit 6: AsiDNA in combination with carboplatin
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Exhibit 5: AsiDNA standalone, systemic administration
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Exhibit 6: AsiDNA in combination with carboplatin
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Combination with PARP inhibitors
Jdey et al explored in vitro the synergistic potential of the combination treatment of PARP inhibitors and AsiDNA2. The researchers studied AsiDNA with PARP inhibitor or standalone in 21 cancer cell lines in total with different BRCA status and three non-tumour cell lines. The most detailed comparison has been made between AsiDNA and PARP inhibitor olaparib using a breast cancer model. BRCA mutations were observed in 8.8% of all new breast cancer cases, which increased to 30% in the difficult to treat triple-negative (ER-, PR-, HER2-) breast cancer subgroup. The main conclusions were:
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AsiDNA in combination with olaparib demonstrated a synergistic effect in all cell lines regardless of the BRCA status (Exhibit 7A and 7B), which could open new indications for PARP inhibitors ie the presence of BRCA mutation would not be necessary for the use of a PARP inhibitor.
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Standalone AsiDNA did not induce damage to DNA by itself and did not show any toxicity in non-tumour cells.
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The combination of AsiDNA with other PARP inhibitors (veliparib, niraparib, iniparib, talazoparib and rucaparib) was shown to be effective as well.
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Different molecular mechanisms were observed underlying the effects of AsiDNA or olaparib, which suggests that resistance to one drug will increase sensitivity to the other drug making a double resistance very unlikely.
Exhibit 7: Effects of AsiDNA in combination with olaparib on cancer and normal cell lines
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Source: Jdey et al. Note: Charts A and B show that the treatment with AsiDNA and olaparib accumulates DNA damage in cancer cells, but not healthy cells, as evaluated with comet assay (tail moment indicates DNA damage); MDAMB231 = BRCA-proficient breast cancer cells; BC227 = BRCA-deficient breast cancer cells; MCF10A and MCF12A = normal cells.
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AsiDNA development strategy
Currently Onxeo is conducting preclinical studies in other tumour models and also in combination with PARP inhibitors. Onxeo indicated that it aims to file the investigational new drug application by end-2017, which will likely allow initiation of Phase I in H118, in our view. The Phase I trial will be in a variety of tumours, which will allow the selection of the best indication to progress forward.
Following the acquisition of DNA Therapeutics in March 2016 we revised our valuation and included triple negative breast cancer (TNBC) indication to reflect the potential value of AsiDNA. Onxeo mentioned that while this was one of the potential directions, it was open to explore other cancers, such as platinum-resistant ovarian cancer and non-small cell lung cancer. By pathological definition, TNBC lacks an expression of oestrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2). This type of cancer is typically more aggressive when compared to other types of breast cancer and is unresponsive to hormonal and monoclonal antibody therapies (eg trastuzumab). The standard initial treatment options are anthracycline and taxane-based combinations (eg doxorubicin, cyclophosphamide, docetaxel), but patients have a poorer prognosis and overall survival than in other types of breast cancer. A variety of new targeted therapies are in investigation, including PARP inhibitors, with AstraZeneca also exploring its olaparib in Phase III in metastatic breast cancer with BRCA1/2 mutations and HER2 negative disease.
PARP inhibitors on the market and in development
Currently, there are three PARP inhibitors approved by the FDA and all for ovarian cancer: Lynparza (olaparib, AstraZeneca), Rubraca (rucaparib, Clovis Oncology) and Zejula (niraparib, Tesaro). PARP inhibitors piqued the market’s interest after the first drug Lynparza (olaparib, AstraZeneca) was launched in late 2014 and brought $218m in sales in 2016. Initially Lynparza was approved for the treatment for ovarian cancer patients with BRCA mutant tumours no longer responsive to three or more prior therapies. However, in March 2017 AstraZeneca published new data showing that Lynparza delayed the recurrence of ovarian cancer by more than two years compared to a placebo in women with relapsed or recurrent BRCA-mutated ovarian cancer. This will likely allow expanding Lynparza's marketing label in the US to include maintenance therapy for ovarian cancer. AstraZeneca is currently evaluating olaparib in several other indications such as breast and prostate cancer. Pfizer’s talazoparib and Abbvie’s veliparib are two other PARP inhibitors in Phase III, both for breast cancer indication. EvaluatePharma estimates sales of all PARP inhibitors will total $4.8bn by 2022 (Exhibit 8).
Exhibit 8: PAPR inhibitor sales forecast
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Overall, AsiDNA is clearly differentiated from PARP inhibitors, as it acts more upstream; it is not a specific enzyme inhibitor, but activates PARP among other repair proteins (ie it distracts, when olaparib inhibits). Therefore, it represents a new treatment approach by itself or in combination with PARP inhibitors, which could not only potentiate them, but also expand their use beyond BRCA mutated tumours. For example, while the recent Lynparza data are impressive, prolonging the survival by two years versus placebo, all the women selected in the trial had BRCA mutation and only around 15% of all ovarian cancers have this specific mutation. Onxeo will continue discussions with PARPi manufacturers to explore opportunities to combine AsiDNA with PARPi in the treatment of certain gynaecological (ovarian) and pulmonary (NSCL) cancers, in particular for tumours without genetic mutation involved in HR (HR wild type).